.gitignore
LICENSE
Notes
README.md
setup.py
apacepy/__init__.py
apacepy/calibration.py
apacepy/calibration_support.py
apacepy/control.py
apacepy/econ_eval.py
apacepy/epidemic.py
apacepy/features_conditions.py
apacepy/history.py
apacepy/inputs.py
apacepy/model_objects.py
apacepy/multi_epidemics.py
apacepy/scenario_simulation.py
apacepy/sim_events.py
apacepy/support.py
apacepy/time_series.py
apacepy/transmission.py
apacepy.egg-info/PKG-INFO
apacepy.egg-info/SOURCES.txt
apacepy.egg-info/dependency_links.txt
apacepy.egg-info/requires.txt
apacepy.egg-info/top_level.txt
apacepy/analysis/scenarios.py
apacepy/analysis/trajectories.py
apacepy/analysis/visualize_scenarios.py
examples/AdaptiveSchoolClosure/OptimizeMany.py
examples/AdaptiveSchoolClosure/OptimizeOne.py
examples/AdaptiveSchoolClosure/PlotScenarios.py
examples/AdaptiveSchoolClosure/ROOT.py
examples/AdaptiveSchoolClosure/SimulateScenarios.py
examples/AdaptiveSchoolClosure/source/Analysis.py
examples/AdaptiveSchoolClosure/source/Model.py
examples/AdaptiveSchoolClosure/source/ScenarioAnalysis.py
examples/AgeStructuredSIR/AgeStructSIRModel.py
examples/AgeStructuredSIR/PlotTrajs.py
examples/AgeStructuredSIR/SimulateMultiple.py
examples/AgeStructuredSIR/SimulateOne.py
examples/SIR/PlotTrajs.py
examples/SIR/SIRModel.py
examples/SIR/SimulateMultiple.py
examples/SIR/SimulateOne.py
examples/SIRCalibration/Calibrate.py
examples/SIRCalibration/ParameterAnalysis.py
examples/SIRCalibration/PlotTrajs.py
examples/SIRCalibration/README.md
examples/SIRCalibration/SIRCalibrationModel.py
examples/SIRCalibration/SimulateMultiple.py
examples/SIRCalibration/SimulateOne.py
examples/SIRCalibration/data/CalibrationData.py
examples/SIRCalibration/data/prior_distributions.csv
examples/SIREconEval/PlotTrajs.py
examples/SIREconEval/SIREconEvalModel.py
examples/SIREconEval/SimulateMultiple.py
examples/SIREconEval/SimulateOne.py
examples/SIRWithDeath/PlotTrajs.py
examples/SIRWithDeath/SIRWithDeathModel.py
examples/SIRWithDeath/SimulateMultiple.py
examples/SIRWithDeath/SimulateOne.py
examples/SIRWithDiffSymptoms/PlotTrajs.py
examples/SIRWithDiffSymptoms/SIRModelDiffSymptoms.py
examples/SIRWithDiffSymptoms/SimulateMultiple.py
examples/SIRWithDiffSymptoms/SimulateOne.py
examples/SIRWithFeasibleBounds/Calibrate.py
examples/SIRWithFeasibleBounds/PlotTrajs.py
examples/SIRWithFeasibleBounds/README.md
examples/SIRWithFeasibleBounds/SIRWithFeasibleBoundsModel.py
examples/SIRWithFeasibleBounds/SimulateMultiple.py
examples/SIRWithFeasibleBounds/SimulateOne.py
examples/SIRWithObservationCondition/PlotTrajs.py
examples/SIRWithObservationCondition/SIRWithObsConditionModel.py
examples/SIRWithObservationCondition/SimulateMultiple.py
examples/SIRWithObservationCondition/SimulateOne.py
examples/SIRWithQueue/PlotTrajs.py
examples/SIRWithQueue/SIRWithQueueModel.py
examples/SIRWithQueue/SimulateMultiple.py
examples/SIRWithQueue/SimulateOne.py
examples/SIRWithVaccine/PlotTrajs.py
examples/SIRWithVaccine/SIRWithVaccineModel.py
examples/SIRWithVaccine/SimulateMultiple.py
examples/SIRWithVaccine/SimulateOne.py
examples/SISWithResistance/PlotTrajs.py
examples/SISWithResistance/SISWithResistanceModel.py
examples/SISWithResistance/SimulateMultiple.py
examples/SISWithResistance/SimulateOne.py
examples/SchoolClosure/Calibrate.py
examples/SchoolClosure/Plots.py
examples/SchoolClosure/SchoolClosureModel.py
examples/SchoolClosure/SimulateMultiple.py
examples/SchoolClosure/SimulateOne.py
examples/SchoolClosure/SimulateScenarios.py
examples/TB/PlotTrajs.py
examples/TB/SimulateMultiple.py
examples/TB/SimulateOne.py
examples/TB/TBModel.py
tests/R0.py
tests/minimizer.py
tests/read_traj_csvs.py