Metadata-Version: 2.1
Name: airpg
Version: 1.1.1
Summary: A package to automatically access the inverted repeats of archived plastid genomes
Home-page: https://github.com/michaelgruenstaeudl/airpg
Author: Tilman Mehl, Michael Gruenstaeudl
Author-email: tilmanmehl@zedat.fu-berlin.de, m.gruenstaeudl@fu-berlin.de
License: GPLv3
Description: *airpg*: Automatically accessing the inverted repeats of archived plastid genomes
        =================================================================================
        
        [![Build Status](https://travis-ci.com/michaelgruenstaeudl/airpg.svg?branch=master)](https://travis-ci.com/michaelgruenstaeudl/airpg)
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        A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide
        
        ## INSTALLATION
        To get the most recent stable version of *airpg*, run:
        
            pip install airpg
        
        Or, alternatively, if you want to get the latest development version of *airpg*, run:
        
            pip install git+https://github.com/michaelgruenstaeudl/airpg.git
        
        
        ## EXAMPLE USAGE
        
        
        ### [Tutorial 1](airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient)
        Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days.
        
        
        ### [Tutorial 2](airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing)
        Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month.
        
        
        ### [Tutorial 3](airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours)
        Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
        
        
        ### [Tutorial 4](airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations)
        Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906)
        
        
        
        <!--
        ## PACKAGING INSTRUCTIONS
        ```
        #pip install .  ## For local testing
        
        python3 -m build
        python3 -m twine upload --repository testpypi dist/*
        python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps airpg
        
        python3 -m twine upload dist/*
        python3 -m pip install airpg
        ```
        -->
        
        ## CHANGELOG
        See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software.
        
Keywords: plastid genomes,inverted repeats,NCBI Nucleotide
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: POSIX
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown
